The dashboard provides data on COVID-19 testing and positive cases within the UCSF community. UCSF investigators worked with colleagues around the world to establish the COVID-19 Global Rheumatology Alliance registry (rheum-covid.org) to create an open platform for rapid data collection and dissemination during the pandemic. Spreadsheet of over 200 datasets related to COVID-19 pulled from related articles in the Dimensions database, Research datasets, preprints, and figures related to COVID-19, A guide to COVID-19 research resources and datasets, COVID-19 Research and Information Resources, STAT's COVID-19 Drugs and Vaccines Tracker, Impact of COVID-19 Intervention Strategies, COVID-19 Hospital Impact Model for Epidemics (CHIME), Zenodo Coronavirus Disease Research Community, CAS COVID-19 Antiviral Candidate Compound Database, COVID-19 Open Articles Research Dataset (CORD-19). A searchable dataset of over 65,000 scholarly articles about COVID-19 and the coronavirus family of viruses. Available to UCSF faculty, staff and students without IRB. This study is conducted in collaboration with multiple academic institutions and community partners that serve diverse AAPIs. ZSFG Data. This UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. Over 8.9 million cases of COVID-19 have been reported and more than 229,000 people have died due to COVID-19, although the true toll is certainly higher. The information is updated regularly by UCSF Occupational Health and Student Health Services and represents the results of symptomatic and surveillance testing performed on students, campus employees who work in non-clinical settings, employees who work in clinical settings at UCSF … This is a guide to research resources for the novel coronavirus COVID-19 curated by the UCSF Library. It will be updated regularly. You must submit your own IRB for "Records Review." The full dataset is also. The dataset license terms support use for applications including research, data mining, machine learning, and analytics at no charge. A NYTimes dashboard of COVID-19 cases in the United States, at the state and county level. 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Facilitate access for UCSF researchers who would like access to these identified data for research. If you do not require identified data, there are other options: 1) studies using "Limited Data" sets can qualify for Exempt review (see definition of "Limited Data") and 2) studies that can be done with completely de-identified data do not require IRB review under the 2018 Revised Common Rule. These charts from the Institute for Health Metrics and Evaluation show projected hospital resource use based on COVID-19 deaths. (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). Data available for download. A collaboration between researchers at Berkeley, University of Illinois, and Georgia Tech. The tool is based on work done at UCSF headed by Dr. Dylan Chan, of the Department of Otolaryngology-Head and Neck Surgery and Ana Marija Sola of the UCSF School of Medicine, in collaboration with pediatric SAN FRANCISCO (KGO) -- On Dec. 31, UCSF'S Dr. Charles Chiu and his colleagues were in a lab when they found what they are calling"L-452R," a California variant of COVID … This tool may be used for estimating the risks associated with classrooms of different sizes. Data powers UCSF work in healthcare, research, education and administration. Statement on COVID-19 and Anti-Asian Racism Racial Equity in Online Environments UC Equity & Inclusion Guidance During COVID-19 COVID-19 Resources in Multiple Languages Remote Resources for those Who Experience Interpersonal Violence COVID-19 - Racial Equity & Social UCSF scientists have launched Covidseeker, a study that invites the public to contribute the location data that Google collects from their mobile devices as part of an effort to improve contact tracing and help scientists understand how COVID-19 spreads. Participant Recruitment Program This UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. This is an international pediatric and adult database to monitor and report outcomes of COVID-19 occurring in hidradenitis suppurativa (HS) patients. The underlying data is available for download. UCSF COVID-19 Patient Data for Research is Now Available April 15, 2020 As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). We will use these data to better understand risk of infection and clinical course, track outcomes, and inform HS management in the setting of COVID-19. As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). January 21, 2021: New FAQs for UCSF Health patients about getting the COVID-19 vaccine. Login to access the UCSF COVID-19 Data Mart Wiki. BCHSI, CTSI and IT partnered to create a ‘blanket IRB’ that enables access to the UCSF EHR COVID-19 Data. To make sure a vaccine is safe for everyone, I’d personally feel most comfortable with six months of data from phase III testing * . The vaccine can help protect against COVID-19 re-infection. Submit a study proposal to the IRB, Step 2. Be sure to specify COVID-19 in study alias and reference IRB #20-30545, UCSF COVID-19 Research Data Mart in your IRB study. The goal is to provide daily updates to decision-makers at the state and local levels on how well social distancing interventions are working, using anonymized, aggregated data sets from mobile devices, along with analytic support for interpretation. The dashboard provides data on COVID-19 testing and positive cases within the UCSF community. UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. Clinical trial data repository - working on adding and curating data from COVID-19 trials, A collection of registered clinical studies related to COVID-19, Interactive map and database of clinical trials related to COVID-19. Includes regularly updated information on COVID-19 data in California. covid-19 UCSF Research Shows Industries in Which Workers Are Most Likely to Die From COVID By Sergio Quintana • Published January 24, 2021 • Updated on January 24, 2021 at 1:06 am Latest Updates. All patients who start high-flow oxygen (WHO COVID-19 level 5; > 6L oxygen by nasal prongs or mask) will be entered in an observational registry which will only require extraction of medical record data. This tool was developed by Predictive Healthcare at Penn Medicine to assist hospitals and public health officials with hospital capacity planning. Researchers interested in funding opportunities related to COVID-19 should check out this website from the UCSF Research Development Office The wiki has FAQs, more details about the specifics of this Research Data Mart, instructions for IRB application submission, and many other support resources and links. The recent data on safety and efficacy of three of the COVID-19 vaccines indicate that some of us will make that decision soon. CDC: COVID-NET: A Weekly Summary of U.S. COVID-19 Hospitalization Data CDC: National Center for Health Statistics: Provisional Death Counts for Coronavirus Disease (COVID-19) COVIDMINDER: reveals the regional disparities in outcomes, determinants, and mediations of the COVID-19 pandemic. Interactive population health mapping website that curates publicly available data and visualizes it at the census tract level. COVID-19 Data and Reports. Depending on your study's requirements, you will either need to simply complete the terms of use for access to the UCSF COVID-19 Research Data Mart or meet with a consultant to assist you with your data needs. Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. Full data is, US COVID-19 testing data by state - includes positive and negative tests, pending tests, and number of people tested. We will describe the sources of this data, the structures where they are stored, and how to gain access. In this session, we will review the data sources -- including UCSF COVID-19 Data Mart, UC-wide CORDS data, and de-identified data for research. When UCSF wanted to look into COVID-19 disparities in the Black community, they tapped Dr. Kim Rhoads. This is a UCSF-only forum. The CDC estimated that 299,028 excess deaths occurred in the United States between January 26 and October 3, with the highest burden of excess deaths among adults age 25-44 years and the Hispanic/Latinx population. This UCSF COVID-19 Research Data Mart includes: Step 1. UCSF is committed to providing a safe and healthy environment for our employees, learners, patients and families. University of California San Francisco; Give to UCSF; UCSF’s innovative, collaborative approach to patient care, research and education spans disciplines across the life sciences, making it a world leader in scientific discovery and its translation to improving health. SF Chronicle's map of every reported coronavirus case in the Bay Area, California and the U.S. The Broad Terra cloud workspace combines raw COVID-19 sequencing data with workflows and Jupyter Notebooks, Human transcriptional responses to SARS-CoV-2 infection from NCBI Geo, A dataset of over 100 million tweets related to COVID-19, A data collection focusing on the social, behavioral, public health, and economic impact of the novel coronavirus global pandemic from the Inter-university Consortium for Political and Social Research (ICPSR). Work is currently underway to create a dataset of COVID-19 patients from Zuckerberg San Francisco General Hospital (ZSFG). This website works best with modern browsers such as the latest versions of Chrome, Firefox, Safari, and Edge. Utilizing Imaging Data for COVID-19 related research is being coordinated by Radiology and Biomedical Imaging. Summary data of daily COVID-19 tests across the 5 UC health systems. Data related to COVID-19 testing and positive case at UCSF are available on the UCSF COVID-19 Dashboard. Want access to electronic health record data on UCSF COVID-19 patients? It can help us all do our part and see over time how the situation is … UCSF Partnership to Guide State COVID-19 Response. Online portal for COVID-19 modeling research, Search, retrieve, and analyze SARS-CoV-2 GenBank data. This visualization shows the impact of intervention strategies and their combinations on the spread of COVID-19. To achieve this, we offer the following symptomatic and asymptomatic testing to members of the UCSF community. The partnership between UCSF, Fortanix, Microsoft, and Intel aims to overcome the data privacy issues that inhibit the development of the broad data sets necessary for … The goal is to align our collective efforts to address the pandemic by creating a centralized, secure research data set and then facilitating access to this data set at the local level. UCSF Medical Center tests all incoming patients for COVID, whether they have symptoms or not, and Wachter has used that data to put together probabilities. CAS has built an open source dataset assembled from CAS REGISTRY® including known anti-viral drugs and related chemical compounds that are structurally similar to known antivirals. Data extracts from the UCSF Electronic Health Record System (APeX) include patients who have been tested for or diagnosed with COVID-19. Note that link requires UCSF login. UCSF COVID-19 Research Data Mart available for UCSF IRB approved studies. Rhoads is an epidemiologist and biostatistician at UCSF who has done extensive outreach in the Bay Area’s Black community. This dashboard from non-profit journalism site CalMatters covers CA Covid-19 cases, deaths, testing, and state supplies. UCSF Coronavirus & COVID-19 Research From CTSI, Open Proposals is an invitation to contribute to team discussions on Coronavirus and COVID-19 related research at UCSF. San Francisco’s response to the coronavirus emergency is grounded in data, science and facts. It looks like you're using Internet Explorer 11 or older. A network of infectious disease epidemiologists working with technology companies to use aggregated mobility data to support the COVID-19 response. The COVID Racial Data Tracker tracks the impact of COVID on different communities by collecting, publishing, and analyzing racial data on the pandemic from across the United States. SARS-CoV-2 sequences currently listed in GenBank and the Sequence Read Archive. UCSF pediatrician Naomi Bardach, MD ’03, who is researching methods to control the spread of the SARS-CoV-2 coronavirus, shares why she’s optimistic that schools can reopen safely. San Francisco COVID-19 Data Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. Includes all global cases. Sign up to receive alerts by text message: Text 333 111 and enter “UCSF” January 21, 2021: Chief Clinical Officer Josh Adler shares further rollout of vaccine to new populations and notes short supply. If you are a UCSF patient, find more FAQs on the Patient Hub . For collaborations using imaging, please send email to [email protected], ©2021 The Regents of the University of California, UCSF COVID-19 Electronic Health Record Data For Research. Basic data will be assembled for each patient (such as ventilatory status and survival). COVID-19 California Dashboard UC-Wide COVID Research Data Set (CORDS). Most current research points to higher COVID-19 infection rates among Black people in the U.S. A new long-term research collaboration between UCSF, Stanford University and the Chan Zuckerberg Biohub – with $13.6 million in funding from the Chan Zuckerberg Initiative – includes a major study led by investigator George Rutherford, MD. COMPASS stands for “COVID-19 Effects on the Mental and Physical Health of Asian Americans & Pacific Islanders Survey Study (COMPASS)". Utilizing Imaging Data for COVID-19 related research is being coordinated by Radiology and Biomedical Imaging. Data are an important tool to help San Franciscans see the whole picture of coronavirus in our community. PRIORITY (Pregnancy CoRonavIrus Outcomes RegIsTrY) is a prospective cohort study of pregnant and recently pregnant women who are: either patients under investigation for COVID-19 or a confirmed case of COVID-19. Open access research articles, software, presentations, and datasets related to COVID-19. This will facilitate access for other researchers who would like access to these identified data for research. Pediatric COVID Risk Calculator We have developed an online tool to help determine the risk of asymptomatic infection with SARS-CoV-2, the virus that causes COVID-19. The dashboard below provides data on COVID-19 testing and positive cases within the UCSF community. Note that this site may be behind a paywall. Share, comment, contribute, and communicate about relevant ideas, plans, and discovery. The criteria for identifying COVID-19 patients is the same across UCSF for all reporting and is determined by the UCSF Medical Center. Presented by: Eugenia Rutenberg and Dima Lituiev Description: UCSF has several data sources available for COVID-19 research.In this session, we will review the data sources -- including UCSF COVID-19 Data Mart, UC-wide CORDS data, and de-identified data for research. For collaborations using imaging, please send email to, EDRP for Clinical and Quality Initiatives, Instructions for Staff Providing Clinical Data, 2018 Clinical Data Colloquium for Researchers, Login to the wiki for more detailed instructions, Login to access the UCSF COVID-19 Data Mart Wiki, instructions for IRB application submission. IRB has established a COVID-19 Rapid Review Team and most reviews take under a week. We are managing a UCSF COVID-19 Research Data Mart with IRB approval (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). The Oxford COVID-19 Government Response Tracker (OxCGRT) aims to track and compare government responses to the coronavirus outbreak worldwide rigorously and consistently. It is a collaboration of the COVID Tracking Project and the Antiracist Research & Policy Center. For more details on access and the data: visit the Wiki and see slides from the Research Data Series webinar. People who have had COVID-19 may develop some immunity against the coronavirus, but this immunity is highly variable and may not last long. Register your request for data access by submitting a request with the CTSI ". But with COVID-19, we’re learning that kids aren’t as infectious as adults are. UCSF has created an interactive tool to allow users to estimate the likelihood that a child in any county of the United States may have asymptomatic COVID-19. UCSF Research Data Series. A “model of models” that contains assessments of the spread of COVID-19, short-term forecasts of disease trends, and scenarios of the course of the disease from modeling groups across the country. UCSF study ranks deadliest jobs during the COVID-19 pandemic ... Yuli Edelstein, the Israeli health minister, told The Andrew Marr Show on Sunday that the data from their vaccination programme suggests a first dose offered around 30 per cent protection from coronavirus. Now available: UCSF COVID-19 Electronic Health Record Data For Research Once you have IRB approval, register your request. Description: UCSF has several data sources available for COVID-19 research. Check back for more details soon. COVID-19 Data Sources at UCSF. Explore resources and guidance in support of diversity, equity, and inclusion during the COVID-19 crisis. COVID: UCSF Infectious Disease Expert Says Indefinite Stay-at-Home Order Wrong Call, Not Data-Driven By Betty Yu January 3, 2021 at 5:55 am Filed Under: Coronavirus , COVID … The criteria for identifying COVID-19 patients is the same across UCSF for all reporting and is determined by the UCSF Medical Center. UC Health EVP Carrie Byington requested UC BRAID, in coordination with the UC Health Data Warehouse (UCHDW) team, to accelerate the creation of a COVID Research Data Set (CORDS). Comparative/control data for patients not tested for COVID-19. see slides from the Research Data Series webinar. Currently the guide contains links to openly accessible research datasets, literature collections, and patient resources related to COVID-19.. If you continue with this browser, you may see unexpected results. 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